PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400011492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 274aa    MW: 30765.7 Da    PI: 7.7132
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400011492genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.9e-132575155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+ +++a+ k +g
  PGSC0003DMP400011492 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARSYDKAAIKCNG 75
                          89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-162585IPR016177DNA-binding domain
PfamPF008471.0E-82575IPR001471AP2/ERF domain
CDDcd000185.56E-262585No hitNo description
Gene3DG3DSA:3.30.730.108.0E-162683IPR001471AP2/ERF domain
PROSITE profilePS5103215.3692683IPR001471AP2/ERF domain
SMARTSM003805.6E-312689IPR001471AP2/ERF domain
PRINTSPR003671.0E-52738IPR001471AP2/ERF domain
PRINTSPR003671.0E-56585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV  60
EAARSYDKAA IKCNGKDAVT NFDPSIYENE VNSTECSDNA ADHNLDLSLG GSSQEMGDNR  120
GQNSSSNLQL DVHWGHQGSS RLNKPRSQIN FDGQKRSGYN ETETLQLLSQ THLNSSGRVQ  180
PNINEMQKFG EFIRDGETHM VQAYPRQFNS YQVQTSSNNN VGQIGATSNS QEWHPNYEII  240
TTAAASSGFP QQIIRTQNWS QNNGFHHNFM RPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773820.0EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343193.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
SwissprotP479271e-67AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM1A7W30.0M1A7W3_SOLTU; Uncharacterized protein
TrEMBLM1A7W50.0M1A7W5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000165850.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-69AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]